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    LOC4346968 endoglucanase 22-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346968, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4346968
    Gene description
    endoglucanase 22-like
    Locus tag
    OSNPB_090394300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GLU11; OsGLU11; B1339H09.3
    Expression
    Broad expression in roots before flowering (RPKM 17.9), flowers (RPKM 14.8) and 6 other tissues See more
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    Genomic context

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    See LOC4346968 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (13631660..13640911, complement)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene endoribonuclease YBEY, chloroplastic-like Neighboring gene malonyl-CoA decarboxylase, mitochondrial Neighboring gene probable plastidic glucose transporter 1 Neighboring gene type IV inositol polyphosphate 5-phosphatase 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    endoglucanase 22
    Names
    Endo-1,4-beta glucanase 22
    LOC_Os09g23084
    OSJNOa018M17.6
    putative endo-beta-1,4-glucanase
    XP_015612486.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422754.1 → NP_001409683.1  endoglucanase 22 precursor

      Status: VALIDATED

      Source sequence(s)
      AK105580, AP014965, CI774442, CI778573
      UniProtKB/Swiss-Prot
      Q0J1Y7, Q6H3Z9

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      13631660..13640911 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757000.2 → XP_015612486.1  endoglucanase 22

      UniProtKB/Swiss-Prot
      Q6H3Z9
      Conserved Domains (1) summary
      PLN02420
      Location:39 → 527
      PLN02420; endoglucanase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6H3Z9.2 GenPept UniProtKB/Swiss-Prot:Q6H3Z9

    Gene LinkOut

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