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    LOC4339838 glutathione gamma-glutamylcysteinyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339838, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339838
    Gene description
    glutathione gamma-glutamylcysteinyltransferase 1
    Locus tag
    OSNPB_060102300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsPCS2; OsPCS1c; OsPCS1full
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    Genomic context

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    See LOC4339838 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (323373..330273)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (167372..174312)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 93G2-like Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene sec-independent protein translocase protein TATB, chloroplastic-like Neighboring gene U-box domain-containing protein 12-like Neighboring gene uncharacterized LOC124625845

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Domain exchange between Oryza sativa phytochelatin synthases reveals a region that determines responsiveness to arsenic and heavy metals. Hayashi S, et al. Biochem Biophys Res Commun, 2020 Mar 5. PMID 31932034
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Domain exchange between Oryza sativa phytochelatin synthases reveals a region that determines responsiveness to arsenic and heavy metals.
      Title: Domain exchange between Oryza sativa phytochelatin synthases reveals a region that determines responsiveness to arsenic and heavy metals.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutathione gamma-glutamylcysteinyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular detoxification of cadmium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in detoxification of copper ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phytochelatin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to metal ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutathione gamma-glutamylcysteinyltransferase 1
    Names
    OSJNBa0075G19.14-1
    Os06g0102300
    phytochelatin synthase
    putative phytochelatin synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      323373..330273
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787469.3 → XP_015642955.1  glutathione gamma-glutamylcysteinyltransferase 1

      UniProtKB/TrEMBL
      A0A1B2LVE0, A0A1Q2SVY7, B9FR19
      Conserved Domains (2) summary
      pfam05023
      Location:8 → 214
      Phytochelatin; Phytochelatin synthase
      pfam09328
      Location:232 → 483
      Phytochelatin_C; Domain of unknown function (DUF1984)

    RNA

    1. XR_003242951.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials