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    LOC4328951 arabinogalactan protein 20 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328951, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328951
    Gene description
    arabinogalactan protein 20
    Locus tag
    OSNPB_020264800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 16.6), flowers (RPKM 13.0) and 2 other tissues See more
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    Genomic context

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    See LOC4328951 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (9444103..9445933, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (9416882..9418739, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene uncharacterized LOC136355036 Neighboring gene uncharacterized LOC4328950 Neighboring gene probable WRKY transcription factor 27 Neighboring gene vacuolar protein sorting-associated protein 29

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    arabinogalactan protein 20
    Names
    Os02g0264800
    P0006C08.11
    arabinogalactan peptide 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      9444103..9445933 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768663.3 → XP_015624149.1  arabinogalactan protein 20

      UniProtKB/TrEMBL
      A0A0P0VHC7, A2X375, Q0E278, Q6ETY5
      Conserved Domains (1) summary
      pfam06376
      Location:36 → 61
      AGP; Arabinogalactan peptide
    Nucleotide Protein
    Heading Accession and Version

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