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    LOC4341010 mitogen-activated protein kinase 11-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341010, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4341010
    Gene description
    mitogen-activated protein kinase 11-like
    Locus tag
    OSNPB_060367900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MPK11
    Expression
    Ubiquitous expression in roots after flowering (RPKM 65.2), leaves after flowering (RPKM 62.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (15600601..15609408, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (15414847..15423582, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic Neighboring gene uncharacterized LOC4341009 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene uncharacterized LOC9272503

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables MAP kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitogen-activated protein kinase 11
    Names
    LOC_Os06g26340
    MAP kinase 11
    OSJNBa0015G09.36-1
    OSJNBa0015G09.36-2
    putative mitogen activated protein kinase
    NP_001389734.1
    NP_001389735.1
    XP_015643952.1
    XP_066167254.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402805.1 → NP_001389734.1  mitogen-activated protein kinase 11 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK100081, CI688518, CI734675
      UniProtKB/Swiss-Prot
      Q0DC96, Q5VN19, Q5VN20
      UniProtKB/TrEMBL
      B3GCL2

    2. NM_001402806.1 → NP_001389735.1  mitogen-activated protein kinase 11 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK100081, CB664287, CI688518, CI734675
      UniProtKB/TrEMBL
      B7EB55

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      15600601..15609408 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066311157.1 → XP_066167254.1  mitogen-activated protein kinase 11 isoform X2

    2. XM_015788466.2 → XP_015643952.1  mitogen-activated protein kinase 11 isoform X1

      UniProtKB/TrEMBL
      B3GCL2
      Conserved Domains (2) summary
      pfam00069
      Location:26 → 265
      Pkinase; Protein kinase domain
      cl21453
      Location:25 → 310
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5VN19.2 GenPept UniProtKB/Swiss-Prot:Q5VN19

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