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    LOC4347916 probable 2-oxoglutarate-dependent dioxygenase SLC2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347916, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347916
    Gene description
    probable 2-oxoglutarate-dependent dioxygenase SLC2
    Locus tag
    OSNPB_090570800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1331F11.1
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    Genomic context

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    See LOC4347916 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (27235870..27237246)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22790448..22792021)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351770 Neighboring gene protein HESO1 Neighboring gene uncharacterized LOC9268195 Neighboring gene ACT domain-containing protein ACR10 Neighboring gene uncharacterized LOC136351771

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable 2-oxoglutarate-dependent dioxygenase SLC2
    Names
    Os09g0570800
    feruloyl CoA ortho-hydroxylase 1
    putative dioxygenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      27235870..27237246
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757099.3 → XP_015612585.1  probable 2-oxoglutarate-dependent dioxygenase SLC2

      UniProtKB/Swiss-Prot
      A0A0P0XRV8, Q0IZG2, Q651B6
      UniProtKB/TrEMBL
      A2Z493
      Conserved Domains (1) summary
      PLN02947
      Location:2 → 368
      PLN02947; oxidoreductase
    Nucleotide Protein
    Heading Accession and Version

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