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    LOC4330284 mRNA m(6)A methyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330284, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4330284
    Gene description
    mRNA m(6)A methyltransferase
    Locus tag
    OSNPB_020672600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1197_E09.7; OJ1493_H11.20
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    Genomic context

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    See LOC4330284 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27847010..27852361)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27360422..27365732)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330282 Neighboring gene mitochondrial import inner membrane translocase subunit TIM23-1 Neighboring gene uncharacterized LOC4330285 Neighboring gene probable serine/threonine-protein kinase WNK4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice. Zhang F, et al. PLoS Genet, 2019 May. PMID 31116744, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The findings revealed for the first time that FIP plays an indispensable role in plant early sporogenesis.
      Title: The subunit of RNA N6-methyladenosine methyltransferase OsFIP regulates early degeneration of microspores in rice.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA N6-methyladenosine methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable N6-adenosine-methyltransferase MT-A70-like
    Names
    LOC_Os02g45110
    putative m6A methyltransferase
    NP_001403747.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416818.1 → NP_001403747.1  probable N6-adenosine-methyltransferase MT-A70-like

      Status: VALIDATED

      Source sequence(s)
      AK070286, CB664596, CI108954, CI607212
      UniProtKB/Swiss-Prot
      A0A0P0VMW0, Q6EU10

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      27847010..27852361
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6EU10.1 GenPept UniProtKB/Swiss-Prot:Q6EU10

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials