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    LOC4328298 trans-Golgi network-localized SYP41-interacting protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328298, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328298
    Gene description
    trans-Golgi network-localized SYP41-interacting protein 1
    Locus tag
    OSNPB_020148300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328298 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2656438..2666968)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (2648604..2659152)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein CHLOROPLAST IMPORT APPARATUS 2 Neighboring gene mitogen-activated protein kinase 3-like Neighboring gene uncharacterized LOC4328299 Neighboring gene GATA transcription factor 17-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    trans-Golgi network-localized SYP41-interacting protein 1
    Names
    Os02g0148300
    P0479D12.14
    golgin subfamily A member 4
    myosin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      2656438..2666968
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769232.3 → XP_015624718.1  trans-Golgi network-localized SYP41-interacting protein 1

      UniProtKB/TrEMBL
      B9F2Q7
      Conserved Domains (2) summary
      COG1196
      Location:343 → 1113
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1544 → 2425
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein
    Heading Accession and Version

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