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    LOC4351983 disease resistance protein RGA5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351983, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4351983
    Gene description
    disease resistance protein RGA5-like
    Locus tag
    OSNPB_120281300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    Pita; KPt.1; Pi-ta; Pita-K1; Pita-Q15
    Expression
    Broad expression in roots before flowering (RPKM 7.7), roots after flowering (RPKM 3.5) and 4 other tissues See more
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    Genomic context

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    See LOC4351983 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (10667719..10673311, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (10606310..10612354, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277093 Neighboring gene uncharacterized LOC107279606 Neighboring gene disease resistance protein RGA4-like Neighboring gene uncharacterized LOC4351985

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Coevolutionary Dynamics of Rice Blast Resistance Gene Pi-ta and Magnaporthe oryzae Avirulence Gene AVR-Pita 1. Jia Y, et al. Phytopathology, 2016 Jul. PMID 27070427
    2. tA single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta. Bryan GT, et al. Plant Cell, 2000 Nov. PMID 11090207, Free PMC Article
    3. The rice blast resistance gene Ptr encodes an atypical protein required for broad-spectrum disease resistance. Zhao H, et al. Nat Commun, 2018 May 23. PMID 29795191, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA5-like
    Names
    NB-ARC domain protein
    NBS-LRR resistance protein
    Os12g0281300
    Pi No.4
    Pi-ta variant KPt.1
    Pi-ta variant KPt.2
    Pi-ta variant KPt.7
    Pi-ta variant KPt.8
    disease-resistance protein Pita

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      10667719..10673311 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765157.3 → XP_015620643.1  disease resistance protein RGA5-like isoform X2

      UniProtKB/TrEMBL
      B8BP45
      Conserved Domains (4) summary
      cd02947
      Location:910 → 999
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
      sd00033
      Location:623 → 645
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:211 → 502
      NB-ARC; NB-ARC domain
      pfam13191
      Location:207 → 328
      AAA_16; AAA ATPase domain

    2. XM_015765156.3 → XP_015620642.1  disease resistance protein RGA5-like isoform X1

      UniProtKB/TrEMBL
      A0A8J8YGA0, B8BP45, B9GCN6, Q0INX2, Q2QTV8
      Conserved Domains (3) summary
      cd02947
      Location:933 → 1022
      TRX_family; TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox ...
      pfam00931
      Location:211 → 463
      NB-ARC; NB-ARC domain
      pfam18052
      Location:40 → 108
      Rx_N; Rx N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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