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    LOC4343954 copper-transporting ATPase PAA1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343954, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4343954
    Gene description
    copper-transporting ATPase PAA1, chloroplastic
    Locus tag
    OSNPB_070623200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343954 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (26016600..26018884)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (25790365..25792702)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene multifunctional methyltransferase subunit TRM112 homolog A Neighboring gene calmodulin-binding transcription activator 1 Neighboring gene serine/arginine-rich splicing factor SC35 Neighboring gene transcription elongation factor SPT4 homolog 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copper-transporting ATPase PAA1, chloroplastic
    Names
    Os07g0623200
    P0524E08.111
    metal-transporting P-type ATPase-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      26016600..26018884
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791568.3 → XP_015647054.1  copper-transporting ATPase PAA1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B9FUA9
      Conserved Domains (1) summary
      cd00371
      Location:89 → 144
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...

    2. XM_015791569.3 → XP_015647055.1  copper-transporting ATPase PAA1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A0P0X8S1, Q7XI43
      Conserved Domains (1) summary
      cd00371
      Location:89 → 144
      HMA; Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain ...
    Nucleotide Protein
    Heading Accession and Version

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