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    LOC4324661 RGG repeats nuclear RNA binding protein A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324661, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324661
    Gene description
    RGG repeats nuclear RNA binding protein A
    Locus tag
    OSNPB_010721900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 96.3), leaves before flowering (RPKM 84.6) and 6 other tissues See more
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    Genomic context

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    See LOC4324661 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30692494..30695705, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (30095420..30098803, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324659 Neighboring gene putative disease resistance protein RGA3 Neighboring gene probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial Neighboring gene transfer RNA valine (anticodon UAC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RGG repeats nuclear RNA binding protein A
    Names
    Os01g0721900
    P0690B02.26-1
    P0690B02.26-2
    nuclear RNA binding protein A-like
    putative nuclear RNA binding protein A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30692494..30695705 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766580.3 → XP_015622066.1  RGG repeats nuclear RNA binding protein A

      UniProtKB/TrEMBL
      A0A0P0V7J8, A2ZXC9, Q8W0D1
      Conserved Domains (2) summary
      pfam04774
      Location:161 → 271
      HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
      pfam09598
      Location:1 → 76
      Stm1_N
    Nucleotide Protein
    Heading Accession and Version

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