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    LOC4331743 IQ domain-containing protein IQM2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331743, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331743
    Gene description
    IQ domain-containing protein IQM2
    Locus tag
    OSNPB_030167200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 10.1), leaves after flowering (RPKM 7.3) and 6 other tissues See more
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    Genomic context

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    See LOC4331743 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3641498..3646150, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3631151..3635535, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene EID1-like F-box protein 3 Neighboring gene non-specific lipid transfer protein GPI-anchored 14 Neighboring gene small ribosomal subunit protein eS28 Neighboring gene uncharacterized LOC4331744 Neighboring gene receptor homology region, transmembrane domain- and RING domain-containing protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    IQ domain-containing protein IQM2
    Names
    IQ domain-containing protein IQM5
    Os03g0167200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      3641498..3646150 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308436.1 → XP_066164533.1  IQ domain-containing protein IQM2 isoform X1

      UniProtKB/TrEMBL
      B9FBI6, Q0DUU4, Q10R95

    2. XM_066308439.1 → XP_066164536.1  IQ domain-containing protein IQM2 isoform X1

      UniProtKB/TrEMBL
      B9FBI6, Q0DUU4, Q10R95

    3. XM_066308438.1 → XP_066164535.1  IQ domain-containing protein IQM2 isoform X2

      UniProtKB/TrEMBL
      B9FBI6

    4. XM_015777007.3 → XP_015632493.1  IQ domain-containing protein IQM2 isoform X1

      UniProtKB/TrEMBL
      B9FBI6, Q0DUU4, Q10R95
      Conserved Domains (1) summary
      pfam09815
      Location:215 → 250
      XK-related; XK-related protein

    5. XM_066308440.1 → XP_066164537.1  IQ domain-containing protein IQM2 isoform X1

      UniProtKB/TrEMBL
      B9FBI6, Q0DUU4, Q10R95

    6. XM_066308437.1 → XP_066164534.1  IQ domain-containing protein IQM2 isoform X1

      UniProtKB/TrEMBL
      B9FBI6, Q0DUU4, Q10R95

    7. XM_066308441.1 → XP_066164538.1  IQ domain-containing protein IQM2 isoform X1

      UniProtKB/TrEMBL
      B9FBI6, Q0DUU4, Q10R95
    Nucleotide Protein
    Heading Accession and Version

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