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    LOC4343122 probable aquaporin PIP2-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343122, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4343122
    Gene description
    probable aquaporin PIP2-1
    Locus tag
    OSNPB_070448800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PIP2a; PIP2-1; OsPIP2;1; aquaporin; OsJ_023145; OJ1047_A06.117
    Expression
    Broad expression in milk grains (RPKM 233.7), flower buds (RPKM 127.9) and 5 other tissues See more
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    Genomic context

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    See LOC4343122 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (15406427..15409735)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene aquaporin PIP2-4-like Neighboring gene aquaporin PIP2-5-like Neighboring gene mitochondrial pyruvate carrier 4 Neighboring gene two-component response regulator ORR7-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Aquaporin PIP2;1 affects water transport and root growth in rice (Oryza sativa L.). Ding L, et al. Plant Physiol Biochem, 2019 Jun. PMID 30889480
    2. Ubiquitin ligase OsRINGzf1 regulates drought resistance by controlling the turnover of OsPIP2;1. Chen S, et al. Plant Biotechnol J, 2022 Sep. PMID 35587579, Free PMC Article
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. affects water transport and root growth
      Title: Aquaporin PIP2;1 affects water transport and root growth in rice (Oryza sativa L.).
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables water channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable aquaporin PIP2-1
    Names
    LOC_Os07g26690
    Plasma membrane intrinsic protein 2-1
    Plasma membrane intrinsic protein 2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403058.1 → NP_001389987.1  probable aquaporin PIP2-1

      Status: VALIDATED

      Source sequence(s)
      CB643591, CI053963, CI247266, CI291408
      UniProtKB/Swiss-Prot
      A3BJC3, O65336, Q0D6R4, Q8H5N9
      UniProtKB/TrEMBL
      A2YKV4, B7EKW3

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      15406427..15409735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791342.2 → XP_015646828.1  probable aquaporin PIP2-1

      UniProtKB/Swiss-Prot
      Q8H5N9
      UniProtKB/TrEMBL
      B7EKW3
      Conserved Domains (1) summary
      pfam00230
      Location:34 → 271
      MIP; Major intrinsic protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H5N9.1 GenPept UniProtKB/Swiss-Prot:Q8H5N9

    Gene LinkOut

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