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    LOC4342399 ferredoxin--NADP reductase, embryo isozyme, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342399, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4342399
    Gene description
    ferredoxin--NADP reductase, embryo isozyme, chloroplastic-like
    Locus tag
    OSNPB_070147900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FNR; OsJ_23093
    Expression
    Ubiquitous expression in flower buds (RPKM 80.4), leaves after flowering (RPKM 60.5) and 6 other tissues See more
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    Genomic context

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    See LOC4342399 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (2476901..2480228, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At1g30570 Neighboring gene WPP domain-associated protein Neighboring gene N-acetyl-D-glucosamine kinase Neighboring gene anthocyanidin 3-O-glucosyltransferase Neighboring gene flavonol 3-sulfotransferase-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ferredoxin--NADP reductase, embryo isozyme, chloroplastic
    Names
    Ferredoxin--NADP reductase, embryo isozyme, chloroplast precursor (FNR)
    LOC_Os07g05400
    P0022E03.21-1
    precursor ferredoxin-NADP+ oxidoreductase
    XP_015646844.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402995.1 → NP_001389924.1  ferredoxin--NADP reductase, embryo isozyme, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      CB650952, CI060580, CI429477, CI666883
      UniProtKB/Swiss-Prot
      A0A0P0X2G7, O23877, Q0D8L9, Q6ZF67
      UniProtKB/TrEMBL
      A2YI62

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2476901..2480228 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791358.2 → XP_015646844.1  ferredoxin--NADP reductase, embryo isozyme, chloroplastic

      UniProtKB/Swiss-Prot
      O23877
      Conserved Domains (1) summary
      PLN03116
      Location:72 → 378
      PLN03116; ferredoxin--NADP+ reductase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23877.1 GenPept UniProtKB/Swiss-Prot:O23877

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