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    LOC4335542 cell division cycle 5-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335542, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335542
    Gene description
    cell division cycle 5-like protein
    Locus tag
    OSNPB_040348300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    myb26
    Expression
    Ubiquitous expression in flower buds (RPKM 21.1), roots after flowering (RPKM 20.1) and 6 other tissues See more
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    Genomic context

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    See LOC4335542 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (16926783..16934074)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (16579875..16587190)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4335540 Neighboring gene uncharacterized LOC4335541 Neighboring gene U-box domain-containing protein 9 Neighboring gene two-component response regulator ORR29-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cell division cycle 5-like protein
    Names
    Os04g0348300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      16926783..16934074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780804.2 → XP_015636290.1  cell division cycle 5-like protein

      UniProtKB/TrEMBL
      A0A0P0W9C3, Q7XVZ6
      Conserved Domains (2) summary
      COG5147
      Location:1 → 231
      REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
      pfam11831
      Location:406 → 657
      Myb_Cef; pre-mRNA splicing factor component
    Nucleotide Protein
    Heading Accession and Version

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