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    LOC4326477 E3 ubiquitin-protein ligase IPI1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326477, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4326477
    Gene description
    E3 ubiquitin-protein ligase IPI1-like
    Locus tag
    OSNPB_010350900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4326477 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (14055884..14063702)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (14011629..14019466)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 89A2 Neighboring gene disease resistance protein RGA5-like Neighboring gene disease resistance protein RGA5 Neighboring gene uncharacterized LOC136355281 Neighboring gene poly [ADP-ribose] polymerase 2-B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase IPI1-like
    Names
    B1051E10.48-1
    E3 ubiquitin-protein ligase RFI2
    Os01g0350900
    P0463A02.18-1
    putative VIP2 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      14055884..14063702
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766666.3 → XP_015622152.1  E3 ubiquitin-protein ligase IPI1-like

      UniProtKB/TrEMBL
      B8A7Y7
      Conserved Domains (1) summary
      cd16448
      Location:218 → 264
      RING-H2; H2 subclass of RING (RING-H2) finger and its variants
    Nucleotide Protein
    Heading Accession and Version

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