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    LOC9270548 tubulin-folding cofactor C [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270548, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270548
    Gene description
    tubulin-folding cofactor C
    Locus tag
    OSNPB_020557000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1008_F08.25
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    Genomic context

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    See LOC9270548 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21552859..21554383)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21073516..21077184)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280142 Neighboring gene protein MAINTENANCE OF PSII UNDER HIGH LIGHT 1 Neighboring gene uncharacterized LOC4329669 Neighboring gene uncharacterized LOC136355318 Neighboring gene immune-associated nucleotide-binding protein 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-chaperonin tubulin folding pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tubulin complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubulin-folding cofactor C
    Names
    OSJNBb0038F20.1
    Os02g0557000
    putative tubulin folding cofactor C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21552859..21554383
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768379.3 → XP_015623865.1  tubulin-folding cofactor C

      UniProtKB/TrEMBL
      A0A0P0VKE9, A3A808, Q6YVY3
      Conserved Domains (2) summary
      pfam07986
      Location:199 → 317
      TBCC; Tubulin binding cofactor C
      pfam16752
      Location:38 → 138
      TBCC_N; Tubulin-specific chaperone C N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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