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    LOC4328647 EIN3-binding F-box protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328647, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4328647
    Gene description
    EIN3-binding F-box protein 1
    Locus tag
    OSNPB_020200900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 168.9), leaves after flowering (RPKM 122.6) and 6 other tissues See more
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    Genomic context

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    See LOC4328647 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5638806..5641948, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5628117..5631338, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 14 Neighboring gene protein WVD2-like 5 Neighboring gene 23.6 kDa heat shock protein, mitochondrial Neighboring gene uncharacterized LOC4328648

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    EIN3-binding F-box protein 1
    Names
    F-box domain and LRR containing protein
    Os02g0200900
    P0419A09.13-1
    P0419A09.13-2
    putative F-box protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5638806..5641948 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769185.3 → XP_015624671.1  EIN3-binding F-box protein 1

      UniProtKB/TrEMBL
      A0A0N7KEW0, A2X245, A3A490, Q6Z796
      Conserved Domains (3) summary
      cd09293
      Location:468 → 644
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:179 → 207
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00646
      Location:66 → 107
      F-box; F-box domain
    Nucleotide Protein
    Heading Accession and Version

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