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    LOC107280173 uncharacterized LOC107280173 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 107280173, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC107280173
    Gene description
    uncharacterized LOC107280173
    Locus tag
    OSNPB_020522100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC107280173 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19513454..19518496)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19035976..19041003)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107276635 Neighboring gene uncharacterized LOC4329500 Neighboring gene uncharacterized LOC107280004 Neighboring gene uncharacterized LOC4329504 Neighboring gene OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC107280173

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      19513454..19518496
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771306.3 → XP_015626792.1  uncharacterized protein LOC107280173

      Conserved Domains (5) summary
      cd00303
      Location:423 → 513
      retropepsin_like; Retropepsins; pepsin-like aspartate proteases
      cd01647
      Location:649 → 825
      RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
      pfam03732
      Location:169 → 263
      Retrotrans_gag; Retrotransposon gag protein
      cd09274
      Location:919 → 1033
      RNase_HI_RT_Ty3; Ty3/Gypsy family of RNase HI in long-term repeat retroelements
      pfam00078
      Location:665 → 825
      RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
    Nucleotide Protein
    Heading Accession and Version

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