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    LOC4343169 E3 ubiquitin-protein ligase At1g12760 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343169, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343169
    Gene description
    E3 ubiquitin-protein ligase At1g12760
    Locus tag
    OSNPB_070463400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1634_H04.119
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 31.6), roots after flowering (RPKM 29.1) and 6 other tissues See more
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    Genomic context

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    See LOC4343169 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (16467691..16472119)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (16302942..16307432)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerases II, IV and V subunit 6A Neighboring gene non-specific lipid-transfer protein Cw18 Neighboring gene uncharacterized LOC9270261 Neighboring gene 5-pentadecatrienyl resorcinol O-methyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plant-type vacuole IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase At1g12760
    Names
    Os07g0463400
    putative RES protein
    putative RING zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      16467691..16472119
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792368.3 → XP_015647854.1  E3 ubiquitin-protein ligase At1g12760 isoform X1

      UniProtKB/TrEMBL
      B8B614
      Conserved Domains (1) summary
      cd16474
      Location:307 → 351
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

    2. XM_015792369.3 → XP_015647855.1  E3 ubiquitin-protein ligase At1g12760 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X6F7, B8B614, Q0D6M6, Q7XIK9
      Conserved Domains (1) summary
      cd16474
      Location:306 → 350
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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