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    LOC4334703 glycine-rich RNA-binding protein RZ1A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334703, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334703
    Gene description
    glycine-rich RNA-binding protein RZ1A
    Locus tag
    OSNPB_030836200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 178.8), roots after flowering (RPKM 160.3) and 6 other tissues See more
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    Genomic context

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    See LOC4334703 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (36107933..36110081, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35134124..35137350, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ferredoxin-3, chloroplastic Neighboring gene actin-3-like Neighboring gene abscisic acid 8'-hydroxylase 1-like Neighboring gene NDR1/HIN1-like protein 3 Neighboring gene NDR1/HIN1-like protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycine-rich RNA-binding protein RZ1A
    Names
    Os03g0836200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      36107933..36110081 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774278.3 → XP_015629764.1  glycine-rich RNA-binding protein RZ1A

      UniProtKB/TrEMBL
      A0A0P0W5R3, A2XNS3, A3APH2, Q75LJ7
      Conserved Domains (2) summary
      pfam00098
      Location:128 → 142
      zf-CCHC; Zinc knuckle
      cd21608
      Location:8 → 83
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins

    2. XM_015774277.3 → XP_015629763.1  glycine-rich RNA-binding protein RZ1A

      UniProtKB/TrEMBL
      A0A0P0W5R3, A2XNS3, A3APH2, Q75LJ7
      Conserved Domains (2) summary
      pfam00098
      Location:128 → 142
      zf-CCHC; Zinc knuckle
      cd21608
      Location:8 → 83
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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