U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4324326 pentatricopeptide repeat-containing protein At1g05600 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324326, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4324326
    Gene description
    pentatricopeptide repeat-containing protein At1g05600
    Locus tag
    OSNPB_010913800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4324326 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40459448..40461148)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39824902..39826687)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 2.13 Neighboring gene glycine-rich RNA-binding protein 4, mitochondrial Neighboring gene rho GDP-dissociation inhibitor 1 Neighboring gene uncharacterized LOC4324340 Neighboring gene uncharacterized LOC4324341

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    pentatricopeptide repeat-containing protein At1g05600
    Names
    Os01g0913800
    P0470A12.47
    fertility restorer homologue-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40459448..40461148
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769542.3 → XP_015625028.1  pentatricopeptide repeat-containing protein At1g05600

      UniProtKB/TrEMBL
      A2WY90, A3A0V0, Q0JGP1
      Conserved Domains (4) summary
      PLN03218
      Location:156 → 408
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:301 → 323
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:439 → 480
      PPR_2; PPR repeat family
      cl29710
      Location:403 → 428
      PPR; PPR repeat
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials