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    LOC4336886 thylakoid lumenal 29 kDa protein, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336886, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336886
    Gene description
    thylakoid lumenal 29 kDa protein, chloroplastic
    Locus tag
    OSNPB_040602100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 37.9), flowers (RPKM 24.6) and 5 other tissues See more
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    Genomic context

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    See LOC4336886 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30891740..30894504)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30385517..30388287)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene multiple organellar RNA editing factor 2, chloroplastic Neighboring gene uncharacterized LOC107276783 Neighboring gene uncharacterized LOC4336887 Neighboring gene trihelix transcription factor GT-3b-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to reactive oxygen species IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thylakoid lumenal 29 kDa protein, chloroplastic
    Names
    Os04g0602100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30891740..30894504
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780570.2 → XP_015636056.1  thylakoid lumenal 29 kDa protein, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WEE1, A0A8J8XUN3, B8ATW7, B9FCB4, Q01HT3, Q0JAF4, Q7XSS2
      Conserved Domains (1) summary
      cd00314
      Location:100 → 350
      plant_peroxidase_like; Heme-dependent peroxidases similar to plant peroxidases
    Nucleotide Protein
    Heading Accession and Version

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