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    LOC4343552 probable mixed-linked glucan synthase 8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343552, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343552
    Gene description
    probable mixed-linked glucan synthase 8
    Locus tag
    OSNPB_070551700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CSFL8; OsCslF8
    Expression
    Biased expression in flowers (RPKM 1.9), flower buds (RPKM 0.9) and 3 other tissues See more
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    Genomic context

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    See LOC4343552 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22139280..22144439, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21910216..21915284, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene universal stress protein PHOS32 Neighboring gene probable mixed-linked glucan synthase 9 Neighboring gene mixed-linked glucan synthase 2-like Neighboring gene mixed-linked glucan synthase 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mannan synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable mixed-linked glucan synthase 8
    Names
    1,3;1,4-beta-D-glucan synthase 8
    Cellulose synthase-like protein F8
    LOC_Os07g36630
    OSJNBb0041B22.114
    putative cellulose synthase-like protein OsCslF1
    NP_001409118.1
    XP_015645600.1
    XP_015645601.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422189.1 → NP_001409118.1  probable mixed-linked glucan synthase 8

      Status: VALIDATED

      Source sequence(s)
      AK067424, AP014963
      UniProtKB/Swiss-Prot
      A0A0P0X7A2, Q84S18
      UniProtKB/TrEMBL
      A3BKZ5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22139280..22144439 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790114.3 → XP_015645600.1  probable mixed-linked glucan synthase 8 isoform X1

      UniProtKB/TrEMBL
      A3BKZ5
      Conserved Domains (2) summary
      pfam03552
      Location:54 → 742
      Cellulose_synt; Cellulose synthase
      cl11394
      Location:257 → 509
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    2. XM_015790115.3 → XP_015645601.1  probable mixed-linked glucan synthase 8 isoform X1

      UniProtKB/TrEMBL
      A3BKZ5
      Conserved Domains (2) summary
      pfam03552
      Location:54 → 742
      Cellulose_synt; Cellulose synthase
      cl11394
      Location:257 → 509
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84S18.1 GenPept UniProtKB/Swiss-Prot:Q84S18

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