U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4339637 cold-regulated 413 inner membrane protein 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339637, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4339637
    Gene description
    cold-regulated 413 inner membrane protein 1, chloroplastic
    Locus tag
    OSNPB_050566800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in milk grains (RPKM 120.5), mature seeds (RPKM 30.4) and 4 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4339637 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28213933..28216108, complement)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339635 Neighboring gene uncharacterized LOC9268415 Neighboring gene uncharacterized LOC112939083 Neighboring gene uncharacterized LOC4339638 Neighboring gene uncharacterized LOC112939007 Neighboring gene aspartic proteinase oryzasin-1-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice. Zhang C, et al. J Exp Bot, 2017 Jul 20. PMID 28981779, Free PMC Article
    2. Expression profiling and bioinformatic analyses of a novel stress-regulated multispanning transmembrane protein family from cereals and Arabidopsis. Breton G, et al. Plant Physiol, 2003 May. PMID 12746512, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. COR413-TM1 expression is regulated by ABF1 transcription factor and resulted in a drought-tolerance
      Title: The OsABF1 transcription factor improves drought tolerance by activating the transcription of COR413-TM1 in rice.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cold-regulated 413 inner membrane protein 1, chloroplastic
    Names
    Os05g0566800
    cold acclimation protein COR413-TM1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      28213933..28216108 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783869.2 → XP_015639355.1  cold-regulated 413 inner membrane protein 1, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KL93, B8AWS3, B9FLN1, Q688W8
      Conserved Domains (1) summary
      pfam05562
      Location:40 → 213
      WCOR413; Cold acclimation protein WCOR413
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials