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    LOC4331845 ethylene-responsive transcription factor 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331845, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4331845
    Gene description
    ethylene-responsive transcription factor 1-like
    Locus tag
    OSNPB_030183000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4331845 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4359392..4361193, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4348734..4350546, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor RAP2-12 Neighboring gene uncharacterized LOC9266398 Neighboring gene ATPase, plasma membrane-type pseudogene Neighboring gene uncharacterized LOC124459653 Neighboring gene SAP-like protein BP-73 Neighboring gene ethylene-responsive transcription factor RAP2-3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Natural Variation in OsLG3 Increases Drought Tolerance in Rice by Inducing ROS Scavenging. Xiong H, et al. Plant Physiol, 2018 Sep. PMID 30068540, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ethylene-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ethylene-responsive transcription factor 1-like
    Names
    AP2 domain containing protein
    Os03g0183000
    ethylene-responsive transcription factor ERF073

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4359392..4361193 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775099.3 → XP_015630585.1  ethylene-responsive transcription factor 1-like

      UniProtKB/TrEMBL
      A0A5S6RD40, Q10QU5, Q94HF3
      Conserved Domains (1) summary
      smart00380
      Location:110 → 170
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

    2. XM_066308375.1 → XP_066164472.1  ethylene-responsive transcription factor 1-like

      UniProtKB/TrEMBL
      A0A5S6RD40, Q10QU5, Q94HF3
    Nucleotide Protein
    Heading Accession and Version

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