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    LOC4326513 S-formylglutathione hydrolase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326513, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326513
    Gene description
    S-formylglutathione hydrolase
    Locus tag
    OSNPB_010939700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 36.5), flowers (RPKM 28.4) and 6 other tissues See more
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    Genomic context

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    See LOC4326513 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (41901999..41922842)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41251165..41272191)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene eukaryotic peptide chain release factor subunit 1-3 Neighboring gene probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic Neighboring gene cytokinin dehydrogenase 4-like Neighboring gene hexokinase-3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-formylglutathione hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in formaldehyde catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    S-formylglutathione hydrolase
    Names
    B1150F11.18-1
    Os01g0939700
    Os01g0939800
    putative S-formylglutathione hydrolase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      41901999..41922842
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022465.2 → XP_025878250.1  S-formylglutathione hydrolase isoform X2

      Conserved Domains (1) summary
      PLN02442
      Location:14 → 232
      PLN02442; S-formylglutathione hydrolase

    2. XM_015765823.3 → XP_015621309.1  S-formylglutathione hydrolase isoform X1

      UniProtKB/TrEMBL
      A0A0P0VCK9, Q5JLP6
      Conserved Domains (1) summary
      PLN02442
      Location:14 → 291
      PLN02442; S-formylglutathione hydrolase
    Nucleotide Protein
    Heading Accession and Version

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