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    LOC4338944 protein ROS1C-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338944, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4338944
    Gene description
    protein ROS1C-like
    Locus tag
    OSNPB_050446550
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338944 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21997479..22008527, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21885747..21896892, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein BUD31 homolog 2-like Neighboring gene uncharacterized LOC4338943 Neighboring gene arginyl-tRNA--protein transferase 2 Neighboring gene uncharacterized LOC136356569 Neighboring gene uncharacterized LOC4338946

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA N-glycosylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in base-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ROS1C-like
    Names
    Os05g0446550
    Os05g0446600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      21997479..22008527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015783900.3 → XP_015639386.1  protein ROS1C-like isoform X2

      UniProtKB/TrEMBL
      B9FPV5
      Conserved Domains (2) summary
      pfam15628
      Location:1683 → 1784
      RRM_DME; RRM in Demeter
      cl23768
      Location:1271 → 1452
      ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

    2. XM_015783899.3 → XP_015639385.1  protein ROS1C-like isoform X1

      UniProtKB/TrEMBL
      B9FPV5
      Conserved Domains (2) summary
      pfam15628
      Location:1684 → 1785
      RRM_DME; RRM in Demeter
      cl23768
      Location:1272 → 1453
      ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

    RNA

    1. XR_010741543.1 RNA Sequence

    2. XR_001546028.3 RNA Sequence

    3. XR_001546027.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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