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    LOC4326897 uncharacterized LOC4326897 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326897, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4326897
    Gene description
    uncharacterized LOC4326897
    Locus tag
    OSNPB_010765200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 16.1), roots after flowering (RPKM 15.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32846416..32855287)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32241233..32250123)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326894 Neighboring gene uncharacterized LOC4326895 Neighboring gene serpin-Z1-like Neighboring gene uncharacterized LOC4326899 Neighboring gene putative calcium-binding protein CML19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326897
    Names
    Os01g0765200
    Os01g0765300
    P0403C05.25
    ubiquitin system component Cue domain-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32846416..32855287
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763364.3 → XP_015618850.1  uncharacterized protein LOC4326897

      UniProtKB/TrEMBL
      B9ET64
      Conserved Domains (3) summary
      TIGR01628
      Location:701 → 909
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam07744
      Location:993 → 1139
      SPOC; SPOC domain
      cd00590
      Location:720 → 786
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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