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    TGAL4 transcription factor TGAL4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349800, updated on 6-Jun-2024

    Summary

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    Gene symbol
    TGAL4
    Gene description
    transcription factor TGAL4-like
    Locus tag
    OSNPB_110152700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsbZIP79
    Expression
    Biased expression in roots before flowering (RPKM 56.0), flower buds (RPKM 6.2) and 1 other tissue See more
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    Genomic context

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    See TGAL4 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (2462166..2471359, complement)

    Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270175 Neighboring gene CEN-like protein 2 Neighboring gene uncharacterized LOC107279539 Neighboring gene uncharacterized LOC9266288 Neighboring gene uncharacterized LOC9266116 Neighboring gene alpha carbonic anhydrase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. Miyamoto K, et al. J Plant Physiol, 2015 Jan 15. PMID 25462074
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsbZIP79 functions as a negative regulator of phytoalexin production triggered by a chitin oligosaccharide elicitor in rice cells.
      Title: Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGAL4
    Names
    LOC_Os11g05480
    Os11g0152700
    bZIP transcription factor 79
    transcription factor HBP-1b(c38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404446.1 → NP_001391375.1  transcription factor TGAL4

      Status: VALIDATED

      Source sequence(s)
      AK069411, BT129813
      UniProtKB/Swiss-Prot
      Q53Q70
      UniProtKB/TrEMBL
      B9G9F8

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

      Range
      2462166..2471359 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762315.2 → XP_015617801.1  transcription factor TGAL4 isoform X2

      UniProtKB/TrEMBL
      B9G9F8
      Conserved Domains (2) summary
      pfam14144
      Location:257 → 331
      DOG1; Seed dormancy control
      cl21462
      Location:179 → 230
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

    2. XM_015762314.2 → XP_015617800.1  transcription factor TGAL4 isoform X1

      UniProtKB/Swiss-Prot
      Q53Q70
      UniProtKB/TrEMBL
      B9G9F8
      Conserved Domains (2) summary
      pfam14144
      Location:258 → 332
      DOG1; Seed dormancy control
      cl21462
      Location:180 → 231
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q53Q70.1 GenPept UniProtKB/Swiss-Prot:Q53Q70

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