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    LOC4345268 4-hydroxybenzoate polyprenyltransferase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345268, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345268
    Gene description
    4-hydroxybenzoate polyprenyltransferase, mitochondrial
    Locus tag
    OSNPB_080322600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsPPT1
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 5.5), flower buds (RPKM 5.3) and 6 other tissues See more
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    Genomic context

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    See LOC4345268 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14146268..14149823, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14078932..14082501, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g74360 Neighboring gene pentatricopeptide repeat-containing protein At5g16420, mitochondrial-like Neighboring gene uncharacterized LOC4345269 Neighboring gene uncharacterized LOC136351332

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional characterization of OsPPT1, which encodes p-hydroxybenzoate polyprenyltransferase involved in ubiquinone biosynthesis in Oryza sativa. Ohara K, et al. Plant Cell Physiol, 2006 May. PMID 16501255
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables prenyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquinone biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    4-hydroxybenzoate polyprenyltransferase, mitochondrial
    Names
    Os08g0322600
    P0048E12.27
    p-hydroxybenzoate polyprenyltransferase
    putative PGT-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      14146268..14149823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793105.3 → XP_015648591.1  4-hydroxybenzoate polyprenyltransferase, mitochondrial

      UniProtKB/TrEMBL
      B8B9Q6, Q0J6G2, Q6ZAH2
      Conserved Domains (1) summary
      PLN02809
      Location:130 → 418
      PLN02809; 4-hydroxybenzoate nonaprenyltransferase
    Nucleotide Protein
    Heading Accession and Version

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