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    LOC4331222 uncharacterized LOC4331222 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331222, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4331222
    Gene description
    uncharacterized LOC4331222
    Locus tag
    OSNPB_020827300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 106.7), flower buds (RPKM 67.7) and 6 other tissues See more
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    Genomic context

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    See LOC4331222 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (36052628..36057663)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35553855..35558836)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable prolyl 4-hydroxylase 3 Neighboring gene sucrose transport protein SUT4-like Neighboring gene uncharacterized LOC4331223 Neighboring gene uncharacterized LOC9267532

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4331222
    Names
    Os02g0827300
    P0452F04.27
    putative splicing factor 3B subunit 2
    splicing factor 3B subunit 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      36052628..36057663
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770072.3 → XP_015625558.1  uncharacterized protein LOC4331222

      UniProtKB/TrEMBL
      A2XB90, A3ACX4, Q6K7Q7
      Conserved Domains (1) summary
      COG5182
      Location:89 → 395
      CUS1; Splicing factor 3b, subunit 2 [RNA processing and modification]
    Nucleotide Protein
    Heading Accession and Version

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