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    LOC4328133 serine/arginine-rich splicing factor RS41 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328133, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4328133
    Gene description
    serine/arginine-rich splicing factor RS41
    Locus tag
    OSNPB_020122800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 150.2), leaves after flowering (RPKM 134.0) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1200282..1203990, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1193399..1197064, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene calcium-binding protein KIC Neighboring gene histone-lysine N-methyltransferase ATXR6 Neighboring gene ribosomal RNA small subunit methyltransferase, chloroplastic Neighboring gene cyclin-dependent kinase A-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor RS41
    Names
    Os02g0122800
    P0575F10.6-1
    putative arginine/serine-rich splicing factor RSp41

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1200282..1203990 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771409.3 → XP_015626895.1  serine/arginine-rich splicing factor RS41 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VE31, B9F269, Q6Z725
      Conserved Domains (2) summary
      COG0724
      Location:73 → 276
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl17169
      Location:96 → 165
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_066307484.1 → XP_066163581.1  serine/arginine-rich splicing factor RS41 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VE15

    3. XM_015771412.2 → XP_015626898.1  serine/arginine-rich splicing factor RS41 isoform X3

      UniProtKB/TrEMBL
      A0A0P0VE15
      Conserved Domains (2) summary
      TIGR01628
      Location:3 → 243
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cl17169
      Location:63 → 132
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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