U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4325982 protein INVOLVED IN DE NOVO 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325982, updated on 12-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4325982
    Gene description
    protein INVOLVED IN DE NOVO 2
    Locus tag
    OSNPB_010126600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0409B08.5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4325982 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (1454291..1457788)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1446176..1450394)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene multicopper oxidase LPR1 homolog 1-like Neighboring gene multicopper oxidase LPR1 homolog 2-like Neighboring gene multicopper oxidase LPR1 homolog 4-like Neighboring gene multicopper oxidase LPR1 homolog 3-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in gene silencing by siRNA-directed DNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein INVOLVED IN DE NOVO 2
    Names
    Os01g0126600
    P0044F08.22
    putative transcription factor X1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      1454291..1457788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766543.3 → XP_015622029.1  protein INVOLVED IN DE NOVO 2

      UniProtKB/TrEMBL
      A0A8J8XNR2, B8AD15, B9EZA7, Q7F761
      Conserved Domains (3) summary
      COG1196
      Location:170 → 439
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam03468
      Location:42 → 151
      XS; XS domain
      pfam03469
      Location:429 → 559
      XH; XH domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials