LOC4331244 probable cytosolic oligopeptidase A [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4331244
Gene description: probable cytosolic oligopeptidase A
Locus tag: OSNPB_020830100
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OJ1124_D06.18
Expression: Broad expression in leaves before flowering (RPKM 167.1), roots after flowering (RPKM 146.3) and 6 other tissues See more
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Genomic context

Location:: chromosome: 2

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (35683511..35688599, complement)

Chromosome 2 - NC_029257.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables metalloendopeptidase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in peptide metabolic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in proteolysis	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: probable cytosolic oligopeptidase A

Names: Os02g0830100; oligopeptidase A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001428216.1 → NP_001415145.1 probable cytosolic oligopeptidase A

Status: VALIDATED

Source sequence(s)

AK065077, AK070094, AP014958

UniProtKB/TrEMBL

A0A0N7KGD8, A0A0P0VRN3, Q6K9T1

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029257.1 Reference IRGSP-1.0 Primary Assembly

Range

35683511..35688599 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015769758.2 → XP_015625244.2 probable cytosolic oligopeptidase A

Conserved Domains (1) summary

cd06456
Location:131 → 799

M3A_DCP; Peptidase family M3 dipeptidyl carboxypeptidase (DCP)