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    LOC4330075 proteasome subunit alpha type-2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330075, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4330075
    Gene description
    proteasome subunit alpha type-2
    Locus tag
    OSNPB_020634900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1626_B09.4
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 114.2), roots after flowering (RPKM 109.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25940601..25944865)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25454229..25458549)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 34 Neighboring gene protein PEROXIN-4 Neighboring gene bifunctional nitrilase/nitrile hydratase NIT4-like Neighboring gene bifunctional nitrilase/nitrile hydratase NIT4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in proteasomal protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex, alpha-subunit complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit alpha type-2
    Names
    Os02g0634900
    alpha 2 subunit of 20S proteasome

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      25940601..25944865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769891.3 → XP_015625377.1  proteasome subunit alpha type-2

      UniProtKB/TrEMBL
      A0A0P0VM26, B8AFT1, Q0DZA8, Q6H852
      Conserved Domains (1) summary
      cd03750
      Location:6 → 231
      proteasome_alpha_type_2; The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming ...
    Nucleotide Protein
    Heading Accession and Version

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