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    LOC9269535 TNF receptor-associated factor homolog 1a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269535, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9269535
    Gene description
    TNF receptor-associated factor homolog 1a
    Locus tag
    OSNPB_120597200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9269535 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (25782054..25790016)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25069525..25077634)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4352700 Neighboring gene calcineurin B-like protein 2 Neighboring gene uncharacterized LOC4352704 Neighboring gene renalase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TNF receptor-associated factor homolog 1a
    Names
    MATH domain-containing protein At5g43560
    Os12g0597200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      25782054..25790016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764716.3 → XP_015620202.1  TNF receptor-associated factor homolog 1a

      UniProtKB/TrEMBL
      B8BMU0
      Conserved Domains (2) summary
      cd00121
      Location:70 → 192
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      TIGR00605
      Location:438 → 547
      rad4; DNA repair protein rad4

    2. XM_015764715.3 → XP_015620201.1  TNF receptor-associated factor homolog 1a

      UniProtKB/TrEMBL
      B8BMU0
      Conserved Domains (2) summary
      cd00121
      Location:70 → 192
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      TIGR00605
      Location:438 → 547
      rad4; DNA repair protein rad4
    Nucleotide Protein
    Heading Accession and Version

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