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    LOC4351526 uncharacterized protein YnbD [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351526, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351526
    Gene description
    uncharacterized protein YnbD
    Locus tag
    OSNPB_120152800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 8.8), flower buds (RPKM 7.3) and 6 other tissues See more
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    Genomic context

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    See LOC4351526 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (2628670..2634138)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (2602357..2607739)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene ACT domain-containing protein ACR12 Neighboring gene uncharacterized LOC136354814 Neighboring gene transcription factor TGAL11-like Neighboring gene uncharacterized LOC136354817 Neighboring gene uncharacterized LOC4351528

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein YnbD
    Names
    Os12g0152800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423327.1 → NP_001410256.1  uncharacterized protein YnbD

      Status: VALIDATED

      Source sequence(s)
      AK073401
      UniProtKB/TrEMBL
      Q2QXL1

    2. NM_001423328.1 → NP_001410257.1  uncharacterized protein YnbD

      Status: VALIDATED

      Source sequence(s)
      AK072885, CB658629
      UniProtKB/TrEMBL
      Q2QXL1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      2628670..2634138
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305976.1 → XP_066162073.1  uncharacterized protein YnbD isoform X1

    2. XM_026021986.2 → XP_025877771.1  uncharacterized protein YnbD isoform X1

      UniProtKB/TrEMBL
      Q2QXL1
      Conserved Domains (1) summary
      cd14527
      Location:97 → 230
      DSP_bac; unknown subfamily of bacterial and plant dual specificity protein phosphatases

    RNA

    1. XR_001542096.3 RNA Sequence

    2. XR_010738135.1 RNA Sequence

    3. XR_003239963.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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