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    LOC4340818 very-long-chain 3-oxoacyl-CoA reductase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340818, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340818
    Gene description
    very-long-chain 3-oxoacyl-CoA reductase 1
    Locus tag
    OSNPB_060299300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Restricted expression toward flower buds (RPKM 1.8) See more
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    Genomic context

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    See LOC4340818 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (11312490..11314405, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (11132736..11134841, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene very-long-chain 3-oxoacyl-CoA reductase 1 Neighboring gene uncharacterized LOC136357066 Neighboring gene uncharacterized LOC107277109 Neighboring gene uncharacterized LOC136356813

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ketoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    very-long-chain 3-oxoacyl-CoA reductase 1
    Names
    Os06g0299300
    P0501G08.16
    putative b-keto acyl reductase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      11312490..11314405 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787267.3 → XP_015642753.1  very-long-chain 3-oxoacyl-CoA reductase 1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WW05, A2YC12, Q5ZA47
      Conserved Domains (2) summary
      PLN02780
      Location:6 → 326
      PLN02780; ketoreductase/ oxidoreductase
      cd05356
      Location:58 → 320
      17beta-HSD1_like_SDR_c; 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs

    2. XM_026026098.2 → XP_025881883.1  very-long-chain 3-oxoacyl-CoA reductase 1 isoform X2

      Conserved Domains (1) summary
      PLN02780
      Location:6 → 245
      PLN02780; ketoreductase/ oxidoreductase
    Nucleotide Protein
    Heading Accession and Version

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