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    LOC4325747 two-component response regulator ORR4-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325747, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325747
    Gene description
    two-component response regulator ORR4-like
    Locus tag
    OSNPB_010952500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RR4; OsRR4; OsJ_04783; P0431G06.9
    Expression
    Broad expression in flower buds (RPKM 37.2), roots after flowering (RPKM 24.5) and 5 other tissues See more
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    Genomic context

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    See LOC4325747 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (42600988..42604392)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41948952..41952360)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene F-box protein At3g54460 Neighboring gene PH, RCC1 and FYVE domains-containing protein 1 Neighboring gene uncharacterized LOC4325748 Neighboring gene protein LONG AFTER FAR-RED 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism. Hirose N, et al. Plant Cell Physiol, 2007 Mar. PMID 17293362
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two-component response regulator ORR4
    Names
    A-type response regulator
    LOC_Os01g72330
    putative response regulator
    typeA response regulator 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401488.1 → NP_001388417.1  two-component response regulator ORR4

      Status: VALIDATED

      Source sequence(s)
      AK101721, CI524432, CI584635
      UniProtKB/Swiss-Prot
      A0A0P0VCZ5, Q4GZK7, Q942A1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      42600988..42604392
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q942A1.1 GenPept UniProtKB/Swiss-Prot:Q942A1

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