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    LOC4341423 crocetin glucosyltransferase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341423, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341423
    Gene description
    crocetin glucosyltransferase, chloroplastic
    Locus tag
    OSNPB_060593800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0652A05.5
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    Genomic context

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    See LOC4341423 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (24184949..24186710, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (23333367..23335150, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene UDP-galactose/UDP-glucose transporter 3 Neighboring gene cyanidin 3-O-rutinoside 5-O-glucosyltransferase Neighboring gene 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial Neighboring gene uncharacterized LOC136357115

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables UDP-glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    crocetin glucosyltransferase, chloroplastic
    Names
    Os06g0593800
    P0502H06.40
    putative anthocyanin 5-O-glucosyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      24184949..24186710 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786203.3 → XP_015641689.1  crocetin glucosyltransferase, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0WYH9, B9FU01, Q69UF5
      Conserved Domains (1) summary
      cl10013
      Location:1 → 463
      Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    Nucleotide Protein
    Heading Accession and Version

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