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    LOC4343201 protein argonaute 18-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343201, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343201
    Gene description
    protein argonaute 18-like
    Locus tag
    OSNPB_070471300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AGO18; OsAGO18; OJ1103_E04.115
    Expression
    Broad expression in leaves after flowering (RPKM 30.8), roots after flowering (RPKM 30.3) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (17058732..17065602)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (16893341..16900211)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343197 Neighboring gene serine/threonine-protein kinase/endoribonuclease IRE1-like Neighboring gene protein SET DOMAIN GROUP 40 Neighboring gene uncharacterized LOC4343202 Neighboring gene pentatricopeptide repeat-containing protein At1g73710

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein argonaute 18
    Names
    LOC_Os07g28850
    P0675B10.105
    putative leaf development protein Argonaute

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422151.1 → NP_001409080.1  protein argonaute 18

      Status: VALIDATED

      Source sequence(s)
      AK069685, AK111455, AP014963, CI371686
      UniProtKB/Swiss-Prot
      Q0D6K0, Q69UP6
      UniProtKB/TrEMBL
      B8B5Y3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      17058732..17065602
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69UP6.1 GenPept UniProtKB/Swiss-Prot:Q69UP6

    Gene LinkOut

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