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    LOC4338679 RNA polymerase II C-terminal domain phosphatase-like 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338679, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338679
    Gene description
    RNA polymerase II C-terminal domain phosphatase-like 4
    Locus tag
    OSNPB_050390500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4338679 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (19029672..19034760)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18928204..18933290)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable transmembrane GTPase FZO-like, chloroplastic Neighboring gene protein FANTASTIC FOUR 1-like Neighboring gene probable membrane-associated kinase regulator 1 Neighboring gene uncharacterized LOC136356709

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development. Ohmori Y, et al. Genes Genet Syst, 2014. PMID 25224975
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. FON2-LIKE CLE PROTEIN1 (FCP1) is involved in the regulation of cell fate determination during leaf development.
      Title: Overexpression analysis suggests that FON2-LIKE CLE PROTEIN1 is involved in rice leaf development.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA polymerase II C-terminal domain phosphatase-like 4
    Names
    Os05g0390500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      19029672..19034760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781931.3 → XP_015637417.1  RNA polymerase II C-terminal domain phosphatase-like 4 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WLV2, A0A6G9KIP8, B9FPE5, Q75KI1
      Conserved Domains (2) summary
      TIGR02250
      Location:165 → 320
      FCP1_euk; FCP1-like phosphatase, phosphatase domain
      cd17729
      Location:375 → 470
      BRCT_CTDP1; BRCT domain of RNA polymerase II subunit A C-terminal domain phosphatase (CTDP1) and similar proteins

    2. XM_015781932.3 → XP_015637418.1  RNA polymerase II C-terminal domain phosphatase-like 4 isoform X2

      UniProtKB/TrEMBL
      A0A6G9KIP8
      Conserved Domains (2) summary
      TIGR02250
      Location:161 → 316
      FCP1_euk; FCP1-like phosphatase, phosphatase domain
      cd17729
      Location:371 → 466
      BRCT_CTDP1; BRCT domain of RNA polymerase II subunit A C-terminal domain phosphatase (CTDP1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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