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    LOC4342784 PHD finger protein ALFIN-LIKE 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342784, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342784
    Gene description
    PHD finger protein ALFIN-LIKE 2-like
    Locus tag
    OSNPB_070233300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_23628
    Expression
    Ubiquitous expression in milk grains (RPKM 35.1), roots after flowering (RPKM 23.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (7494174..7497658, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (7414510..7418067, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene zinc transporter 8-like Neighboring gene cadmium/zinc-transporting ATPase HMA3-like Neighboring gene uncharacterized LOC136357239 Neighboring gene uncharacterized LOC136357301 Neighboring gene AT-hook motif nuclear-localized protein 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pHD finger protein ALFIN-LIKE 2
    Names
    LOC_Os07g12910
    OSJNBa0061L20.107-1
    OSJNBa0061L20.107-2
    PHD finger protein ALFIN-LIKE 2
    nucleic acid binding protein-like
    putative nucleic acid binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403036.1 → NP_001389965.1  pHD finger protein ALFIN-LIKE 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK073637, CI213664
      UniProtKB/Swiss-Prot
      A0A0P0X3Y7, A3BI13, B7EMG8, B8B8I3, Q8H383

    2. NM_001403037.1 → NP_001389966.1  pHD finger protein ALFIN-LIKE 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK111142, AP014963, CI046976, CI521546

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      7494174..7497658 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H383.1 GenPept UniProtKB/Swiss-Prot:Q8H383

    Gene LinkOut

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    Research Materials