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    LOC4347864 uncharacterized LOC4347864 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347864, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347864
    Gene description
    uncharacterized LOC4347864
    Locus tag
    OSNPB_090563700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 6.7), flowers (RPKM 2.7) and 3 other tissues See more
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    Genomic context

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    See LOC4347864 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26844914..26849066)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22399981..22404339)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene ruBisCO large subunit-binding protein subunit alpha Neighboring gene putative F-box protein At2g02030 Neighboring gene uncharacterized LOC4347865 Neighboring gene transfer RNA arginine (anticodon CCG)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to endoplasmic reticulum stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347864
    Names
    OSJNBa0042B15.5
    Os09g0563700
    P0635G10.40

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26844914..26849066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755789.3 → XP_015611275.1  uncharacterized protein LOC4347864

      UniProtKB/TrEMBL
      B8BEL3, Q0IZL1, Q650Y9, Q653B1
      Conserved Domains (1) summary
      pfam10539
      Location:17 → 142
      Dev_Cell_Death; Development and cell death domain
    Nucleotide Protein
    Heading Accession and Version

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