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    LOC4328386 TATA-binding protein-associated factor BTAF1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328386, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4328386
    Gene description
    TATA-binding protein-associated factor BTAF1
    Locus tag
    OSNPB_020161300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ9003_G05.21
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 33.8), roots after flowering (RPKM 30.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3313015..3326814)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3304550..3318377)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene formin-like protein 10 Neighboring gene zinc finger CCCH domain-containing protein 13-like Neighboring gene receptor-like protein EIX2 Neighboring gene peroxidase 3 Neighboring gene polyubiquitin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables TBP-class protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    TATA-binding protein-associated factor BTAF1
    Names
    Os02g0161300
    putative SNF2 domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      3313015..3326814
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026023235.2 → XP_025879020.1  TATA-binding protein-associated factor BTAF1

      UniProtKB/TrEMBL
      Q6H7U1
      Conserved Domains (4) summary
      COG0553
      Location:1422 → 1971
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      sd00044
      Location:1280 → 1315
      HEAT; HEAT repeat [structural motif]
      pfam12054
      Location:780 → 1225
      DUF3535; Domain of unknown function (DUF3535)
      pfam12755
      Location:1341 → 1427
      Vac14_Fab1_bd; Vacuolar 14 Fab1-binding region

    2. XM_066307732.1 → XP_066163829.1  TATA-binding protein-associated factor BTAF1

      UniProtKB/TrEMBL
      Q6H7U1
    Nucleotide Protein
    Heading Accession and Version

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