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    LOC4339489 farnesyl pyrophosphate synthase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339489, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339489
    Gene description
    farnesyl pyrophosphate synthase
    Locus tag
    OSNPB_050543400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    FPPS2
    Expression
    Broad expression in roots before flowering (RPKM 35.4), flower buds (RPKM 31.4) and 5 other tissues See more
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    Genomic context

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    See LOC4339489 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27084781..27088025, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (26966567..26969906, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene RAN GTPase-activating protein 1 Neighboring gene uncharacterized LOC136356447 Neighboring gene protein ANTHESIS POMOTING FACTOR 1 Neighboring gene myb-related protein Hv33 Neighboring gene chaperone protein dnaJ 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Localization of farnesyl diphosphate synthase in chloroplasts. Sanmiya K, et al. Plant Cell Physiol, 1999 Mar. PMID 10353221
    2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dimethylallyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables geranyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in farnesyl diphosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    farnesyl pyrophosphate synthase
    Names
    Os05g0543400
    farnesyl diphosphate synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      27084781..27088025 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781808.3 → XP_015637294.1  farnesyl pyrophosphate synthase

      UniProtKB/TrEMBL
      A0A0P0WQN9, Q0DGA5, Q65XM9
      Conserved Domains (1) summary
      pfam00348
      Location:46 → 310
      polyprenyl_synt; Polyprenyl synthetase
    Nucleotide Protein
    Heading Accession and Version

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