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    LOC4335133 transcription factor PCF1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335133, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335133
    Gene description
    transcription factor PCF1-like
    Locus tag
    OSNPB_040194600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PCF1
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    Genomic context

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    See LOC4335133 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (6587873..6588856, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (6494738..6495672, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene acyl transferase 15-like Neighboring gene ABC transporter G family member 25-like Neighboring gene uncharacterized LOC136356265 Neighboring gene uncharacterized LOC107278778

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene. Kosugi S, et al. Plant Cell, 1997 Sep. PMID 9338963, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor PCF1
    Names
    LOC_Os04g11830
    OSJNBa0040D17.14
    OSJNBb0026E15.1
    Proliferating cell factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419104.1 → NP_001406033.1  transcription factor PCF1

      Status: VALIDATED

      Source sequence(s)
      AK100180, AP014960, D87260

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      6587873..6588856 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23875.1 GenPept UniProtKB/Swiss-Prot:O23875

    Gene LinkOut

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