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    LOC4325442 guanine nucleotide-binding protein-like NSN1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325442, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325442
    Gene description
    guanine nucleotide-binding protein-like NSN1
    Locus tag
    OSNPB_010375000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1111C09.2
    Expression
    Ubiquitous expression in flower buds (RPKM 43.9), mature seeds (RPKM 29.6) and 6 other tissues See more
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    Genomic context

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    See LOC4325442 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (15525517..15529132, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (15462232..15465905, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase LUL2 Neighboring gene uncharacterized LOC112937660 Neighboring gene uncharacterized LOC4325443 Neighboring gene bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic Neighboring gene uncharacterized LOC136352512

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    guanine nucleotide-binding protein-like NSN1
    Names
    B1045D11.37
    Os01g0375000
    putative nucleostemin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      15525517..15529132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765383.3 → XP_015620869.1  guanine nucleotide-binding protein-like NSN1

      UniProtKB/TrEMBL
      A0A0N7KCZ6, A2WQ59, Q0JMN8, Q5ZCV4, Q5ZCX0
      Conserved Domains (5) summary
      cd04178
      Location:153 → 323
      Nucleostemin_like; A circularly permuted subfamily of the Ras GTPases
      TIGR03596
      Location:143 → 415
      GTPase_YlqF; ribosome biogenesis GTP-binding protein YlqF
      pfam08701
      Location:16 → 88
      GN3L_Grn1; GNL3L/Grn1 putative GTPase
      cl03075
      Location:99 → 201
      GrpE; nucleotide exchange factor GrpE
      cl21455
      Location:271 → 385
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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