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    LOC4329919 uncharacterized LOC4329919 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329919, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329919
    Gene description
    uncharacterized LOC4329919
    Locus tag
    OSNPB_020605600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1058_F07.16
    Expression
    Ubiquitous expression in roots after flowering (RPKM 23.4), flower buds (RPKM 20.3) and 6 other tissues See more
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    Genomic context

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    See LOC4329919 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24211839..24216945)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23729250..23734406)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene BAG-associated GRAM protein 1 Neighboring gene uncharacterized LOC112936078 Neighboring gene uncharacterized LOC4329918 Neighboring gene chitinase 6-like Neighboring gene uncharacterized LOC4329921

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splice site recognition IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U1 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4329919
    Names
    Os02g0605600
    putative RNA-binding protein Luc7-like 2
    putative salt tolerance protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24211839..24216945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770651.2 → XP_015626137.1  uncharacterized protein LOC4329919 isoform X1

      UniProtKB/TrEMBL
      B9F0Z1, Q6K8R4
      Conserved Domains (2) summary
      TIGR01622
      Location:319 → 418
      SF-CC1; splicing factor, CC1-like family
      pfam03194
      Location:2 → 314
      LUC7; LUC7 N_terminus

    2. XM_026022682.2 → XP_025878467.1  uncharacterized protein LOC4329919 isoform X2

      Conserved Domains (1) summary
      cl27291
      Location:2 → 285
      LUC7; LUC7 N_terminus

    RNA

    1. XR_010739443.1 RNA Sequence

    2. XR_010739444.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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