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    LOC4324645 uncharacterized LOC4324645 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324645, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324645
    Gene description
    uncharacterized LOC4324645
    Locus tag
    OSNPB_010220300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 32.3), flowers (RPKM 31.1) and 6 other tissues See more
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    Genomic context

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    See LOC4324645 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6593463..6596857)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6583692..6587108)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene endoglucanase 2-like Neighboring gene uncharacterized LOC4324644 Neighboring gene uncharacterized LOC4324646 Neighboring gene subtilisin-like protease SBT2.5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small ribosomal subunit rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324645
    Names
    30S ribosomal protein S6
    Os01g0220300
    P0483F08.18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      6593463..6596857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766616.2 → XP_015622102.1  uncharacterized protein LOC4324645

      UniProtKB/TrEMBL
      A0A0P0V077, B8AAL6, B9EU47, Q9LWD2
      Conserved Domains (1) summary
      cd15465
      Location:3 → 96
      bS6_mito; Mitochondrial Ribosomal Protein (MRP) S6
    Nucleotide Protein
    Heading Accession and Version

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